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  • License MIT

Provides SVG View for Genome Features rendered with the Apollo Track Web Service via JBrowse

Package Exports

  • genomefeaturecomponent

This package does not declare an exports field, so the exports above have been automatically detected and optimized by JSPM instead. If any package subpath is missing, it is recommended to post an issue to the original package (genomefeaturecomponent) to support the "exports" field. If that is not possible, create a JSPM override to customize the exports field for this package.

Readme

GenomeFeatureComponent

Travis npm package Coveralls

Describe GenomeFeatureComponent here.

Instructions

Make sure you have node 8 or better

npm install

npm start

View at http://localhost:3000.

Works by accessing data from an Apollo server.

E.g., http://someserver.org/apollo/track/Honeybee/Official%20Gene%20Set%20v3.2/Group1.1/GB42168-RA.json

[{"strand":1,"children":[[{"phase":0,"strand":1,"fmin":329332,"type":"CDS","fmax":329459},{"phase":2,"strand":1,"fmin":329849,"type":"CDS","fmax":330082},{"phase":0,"strand":1,"fmin":330165,"type":"CDS","fmax":330301},{"phase":2,"strand":1,"fmin":330375,"type":"CDS","fmax":330416},{"strand":1,"fmin":329332,"type":"exon","fmax":329459},{"strand":1,"fmin":329849,"type":"exon","fmax":330082},{"strand":1,"fmin":330165,"type":"exon","fmax":330301},{"strand":1,"fmin":330375,"type":"exon","fmax":330416}]],"name":"GB42168-RA","id":"http://demo.genomearchitect.org/Apollo2/track/Honeybee/Official Gene Set v3.2/Group1.1/GB42168-RA.json","fmin":329332,"type":"mRNA","fmax":330416,"selected":true}]

Goal

The idea is that we can have multiple interactive tracks.

This is an example of how they might be used. The controls / filters can be used to interact and the details section could be part of that interaction.

The top genomic view is the "overview", consisting of a (very sad) variant track and an isoform track, though it could be any number. The red arrow at top indicates a selected region that is linked to the scrollable track at the bottom through a separate eventing model.

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