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higlass-multivec

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Readme

Multivec Tracks for HiGlass

Display genome-wide multivec tracks in HiGlass!

This is the source code for multivec tracks in HiGlass only; for the rest of HiGlass, see these repositories:

HiGlass viewer: https://github.com/hms-dbmi/higlass
HiGlass server: https://github.com/hms-dbmi/higlass-server
HiGlass docker: https://github.com/hms-dbmi/higlass-docker

Installation

npm install higlass-multivec

Usage

There are three types of tracks to choose from:

"basic-multiple-line-chart"
"horizontal-stacked-bar"
"basic-multiple-bar-chart"

Configure the track in your view config; you should be all set from here!

[...
   {
    "type": "horizontal-stacked-bar",
    "tilesetUid": "my-multivec-db",
    "server": "http://test1.resgen.io/api/v1",
       "height": 200,
       "width": 470,
       "options": {
           "labelPosition": "topLeft",
           "labelColor": "black",
           "labelTextOpacity": 0.4,
           "valueScaling": "exponential",
           "trackBorderWidth": 0,
           "trackBorderColor": "black",
           "heatmapValueScaling": "log",
           "name": "all.KL.bed.multires.mv5",
           "scaledHeight": true,
           "backgroundColor": "white",
           "sortLargestOnTop": true,
       },
    },
]

For an example, see src/index.html.

Development

Testing

To run the test suite:

npm run test-watch

Installation

$ git clone https://github.com/hms-dbmi/higlass-multivec.git
$ cd higlass-multivec
$ npm install

If you have a local copy of higlass, you can then run this command in the higlass-multivec directory:

npm link higlass

Commands

Developmental server: npm start
Production build: npm run build