JSPM

Graph theory (a.k.a. network) library for analysis and visualisation

read and write GFF3 data as streams

read from a compressed bgzip file (with .gzi) as if it were uncompressed

JBrowse 2 core libraries used by plugins

read CRAM files with pure Javascript

Parser for BigWig/BigBed files

Parser for BAM and BAM index (bai) files

Read Tabix-indexed files, supports both .tbi and .csi indexes

A BED file format parser with autoSql support

read indexed fasta and bgzipped fasta formats

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

JBrowse 2 code shared between sv type code

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

Read .2bit files in node or webpack

utilities to read GFF3 data

JBrowse 2 code shared between products but not used by plugins

Read features from JBrowse 1 format nested containment list JSON

JBrowse 2 code shared between embedded products

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

Read and write UCSC track and assembly hub files in node or the browser

Parses newick strings into JSON and JSON into newick

Molstar implementation for PDBe

Renders snippets on demand

interval tree, for fast overlapping interval queries

WebGL protein viewer

Web app and service for visualizing models of gene regulatory networks

[](https://travis-ci.org/HelikarLab/ccNetViz) [](https://www.gnu.org/licenses/gpl-3.0) [![semantic-releas

BioJS event system

A WebGL-powered JavaScript library for interactive tree visualisation.

Convience tools to work with seqs

Custom HTMLELement for rendering SwissBiopics and representing which subcellular locations are available

Custom HTMLELement for rendering Rhea reactions

Parses FASTA files

utilities to read GTF data

Display interaction information for different proteins and overlay information about diseases and subcellular location.

JBrowse 2 code shared between web-app type products

JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop

TnT tree display

Neighbor Joining library for NPM.

Display multiple sequences

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways

neXtProt api javascript client

Nucleotide sequence manipulation and analysis library

Parser for BAM and BAM index (bai) files

A network visualisation that displays molecular interaction data, including detailed residue-level information such as binding sites. Used in EBI's Complex Portal and elsewhere.

Visualizes RNA secondary structures.

Custom HTMLELement for rendering Rhea reactions

A sequence logo visualizer

phylo-node: A Molecular Phylogenetic Toolkit using Node.js

Molstar implementation for DrugFlow

create indexed fasta files

React component (and hook) for phylogenetic tree visualistion based on @mkoliba/phylogeny-tree

Biological data models

Read htsjdk Tribble indexes using pure JavaScript

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways

Color schemes for residues

A simple menu builder

Biological Plasmid Visualization Component using AngularJS

Phylogenetic tree visualistion for the web

the core component (widget) of the ApiNATOMY circuit-board

Ancestry: a package for visualization of lineage data

React integration of phylocanvas.gl. Component and hook for phylogenetic tree visualistion.

Simple barchart to show expression levels across experiments

BioJS component to display BLAST alignments.

A module to analyze multiple seqs (information content, frequency, ...)

Molstar implementation for PDBe

Biological Plasmid Visualization Component using AngularJS

LexiconMonoSeq, DOM Text based MSA visualization written in Javascript

A protein sequence viewer written in javascript

Display a protein/nucleotide sequence

Graph theory (a.k.a. network) library for analysis and visualisation

JBrowse 2 text indexing for desktop

A fork of @karpathy's tSNE library

Phylogenetic tree visualisation for the web.

TnT track-based board display

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

Retrieve most relevant GO terms from g:Profiler

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

read and write GTF data as streams

流程设计器

Visualize the HSSP curve and impose the BLAST-derived sequence alignments and allow the user to dynamically filter and export the data shown on the graph for better insights.

BioJS component to provide a box plot graph or bar graph hosted in Stemformatics

Interactive visual representation/ web visualization tool for chromosome ideograms

Module like task queuer for async scripts

BLAST parser

BioJS wrapper for PCViz widget from Pathway Commons team

[](https://travis-ci.org/yeastgenome/sgd_visualization)

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

A GFF (general feature format) parser

Parses clustal files

Bilevel partition

[](https://www.npmjs.org/package/biojs-vis-events) [](http://travis-ci.org/marcoantonioburg

Minimal genome browser based on TnT Board and Ensembl data

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

A grammar for describing microbial genotypes and phenotypes.

TreeMap Visualization

Graph theory (a.k.a. network) library for analysis and visualisation

A BioJS 2.0 component to view protein structures

Visualize events around the World

Parses biom files

Interactive Cluster Heatmap library

Protein feature viewer (uniprot annotation, variants, proteomics, ...)

Venn diagram list comparisons

Contextualisation InDEx for biological Resources discovery: Contextualised visualisation of ELIXIR training materials, events and computing tools in a unique list.

Visualise tissue-specific gene expression

Visualisation of BLAST results

A visualisation tool for displaying rows in a hiearchic manner with heatmap capabilities

For retrieving article metadata from Europe PMC (http://www.europepmc.org). Covers all of PubMed (updated daily) and 3 million full text articles and other sources. A single article or list view can be returned.

Tree data manipulation for TnT

Generates exon intron map

To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones

A module for parsing, reading & writing microtiter plate layouts in XSLX format.

Display multiple sequences

A Feature viewer

InterMine Identifiers Widget

BioJS component to provide a graph of the Rohart MSC Test hosted in Stemformatics

This is the standalone widget for the OLS treeview

Parses strings from files in the GenomeDiff format generated by the breseq variant caller for haploid microbial organisms.

This is a package to aid in the visualisation of various nextprot proteins based on their expression in various human tissues and on various evidences providing these expression data

rest api for ensembl

Component to represent a chromosome with its bands

BioJS component to provide a scatter plot graph hosted in Stemformatics

Graph theory (a.k.a. network) library for analysis and visualisation

javascript bioinformatics format converter and validator

A collection of adapters to combine the MSA and Tree component

PP2_Demo ========

Molstar implementation for PDBe

BioJS component to provide a box plot graph or bar graph hosted in Stemformatics

Lightweight genome browser for CTTV targets based on TnT Genome

A BioJS component for human genetic variation viewer(protein variants).

JS PSICQUIC client

renders a KEGGML file and displays a KEGG pathway

Uses nearest neighbor thermodynamic calculations for primer Tm

A graph visualisation tool for PSICQUIC servers

A component to pin tootlip-like information

Graph theory (a.k.a. network) library for analysis and visualisation

Displays protein domains

JBrowse 2 core libraries used by plugins

A module to analyze multiple seqs (information content, frequency, ...)

BioJS component to provide a box plot graph or bar graph hosted in Stemformatics

Molstar implementation for PDBe

Visualisation of gene to phenotype relationships on the GenomeRNAi database

Graph theory (a.k.a. network) library for analysis and visualisation

Continous integration of BioJS components into Galay

Display multiple sequences

Pretty visualization for RNA sequences

A BioJS component for dynamic, multilevel visualisation of proteomes in UniProt.

Horizon chart js library for DNA data.

A model for Multilayer/Complex Networks

represent a network of protein interactions in a heatmap

Visualiser for the SAM format

Graph theory (a.k.a. network) library for analysis and visualisation

Visualization of protein similarity based on melting curves and distance metric

SAM format parser, with the hability to retrive regions from a ws

Basic kaplan-meier methods

Collection of high performance data visualization libraries

Graph theory (a.k.a. network) library for analysis and visualisation

A t-SNE web visualisation for high dimensional data

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

Parses 2D matrices (e.g. PAM)

Gnomic grammar phylogeny library for NPM

AR Web Visualisation of DICOM Medical Images

Visualisation of human tissues

genbank parser for genbank files

Interactive web heatmap viewer built with JavaScript

A simple pssh parser

TnT library for displaying trees and track-based annotations

Graph theory (a.k.a. network) library for analysis and visualisation

Visualization of protein melting curves

Molfile parser/visualizer in JavaScript

Interactive network visualization tool for intuitive exploratory analysis of heterogeneous knowledge graphs

Displays the information available in the Open PHACTS Linked Data cache about a compound.

Meta package for bio parser

Simple barchart to show expression levels across experiments

visualization a wig formatted file

A javascript library to parse simple interaction file (SIF) files.

A sequence logo vusualizer

A simple snippet parser

A visualisation module for multilayer networks as modelled by mplexnet using ngraph.

circular feature viewer

This widget is a flexible and dynamic ontology visualisation. It can be seen in action on the new Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Contextual functions for Phylocanvas

JavaScript parser for the GenBank Flat File (GBF) format

Interactive visualization of high-density SNP, QTL, GWAS and gene data

neXtProt API and SPARQL client (for node command line interface)

A library of parsers for interconverting between genbank, fasta, and (eventually) sbol through Teselagen's intermediary json format

Creating a basic example for biojs

Nucleotide sequence manipulation and analysis library

A slush generator for BioJS modules

loads a sequence:primer map

Display multiple sequences

Mauve XMFA Parser

Export Phylocanvas trees as SVG

For retrieving article metadata from Europe PMC (http://www.europepmc.org). Covers all of PubMed (updated daily) and 3 million full text articles and other sources. A single article or list view can be returned.

A visualisation for variation data

Graph theory (a.k.a. network) library for analysis and visualisation

Draws a Needle-Plot for mutation data (stacked).

This widget is a standalone autocomplete search widget for the Ontology Lookup Service (OLS) provided by the EMBL-EBI.

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Object and function to deals with a sequence region (reg:start-end)

Interactive phylogenetic tree viewer for the web

Learning bioJS

BioJS Homology tool

Meta packages for bio parser

BioJS component to provide a YuGene graph hosted in Stemformatics

Uniprot text file parser

Custom JSON-Schema keywords for Ajv validator and validation service with API

represent a network of protein interactions

Visual scale-bar for Phylocanvas

[](https://travis-ci.org/yeastgenome/sgd_visualization)

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Custom HTMLELement for rendering Rhea reactions

A component to visualize RDF compact schemas

Client library to retrieve citation data

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Visual history for Phylocanvas

Graph theory (a.k.a. network) library for analysis and visualisation

Snap result viewer for biojs

example of snipsoector

Display binary data adjacent to tree leaves.

MITab Parser

Meta package for bio parser

Draws a heatmap

Easy way to display features

This widget is a flexible and dynamic ontology visualisation. It can be seen in action on the new Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Lexicon-Rainbow Visualization Module

Graph theory (a.k.a. network) library for analysis and visualisation

A collecection of utilities to parse and represent proteins in js

BioJS component to provide a Horizontal Summary graph hosted in Stemformatics

Meta packages for biojs visulizations

Graph theory (a.k.a. network) library for analysis and visualisation

Graph theory (a.k.a. network) library for analysis and visualisation

API client to interface with the TeSS Rest API. Retrieve a list of metedata about upcoming Life science events, training materials, and other training opportunities. Return results filtered by metadata facets

A circular bar chart component for visualising allele frequencies, expression levels, number of samples, you name it!

BioJS component to provide a Box and Bar graph from Stemformatics

Visualise Gene and Protein interaction networks.

Graph theory (a.k.a. network) library for analysis and visualisation

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

A component for visualising disease information from UniProt data

Parser for annotation files

Circos plot for genomics based on MoMIG toolkit

EDAM selector component

Load tree format strings via Ajax.

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Graph theory (a.k.a. network) library for analysis and visualisation

a biojs visulization component for volcano [prototype]

read indexed fasta and bgzipped fasta formats