JSPM

Graph theory (a.k.a. network) library for analysis and visualisation

read and write GFF3 data as streams

read from a compressed bgzip file (with .gzi) as if it were uncompressed

JBrowse 2 core libraries used by plugins

read CRAM files with pure Javascript

A BED file format parser with autoSql support

Read Tabix-indexed files, supports both .tbi and .csi indexes

read indexed fasta and bgzipped fasta formats

JBrowse 2 code shared between sv type code

Parser for BAM and BAM index (bai) files

Parser for BigWig/BigBed files

Read .2bit files in node or webpack

utilities to read GFF3 data

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

JBrowse 2 code shared between products but not used by plugins

JBrowse 2 code shared between embedded products

Read features from JBrowse 1 format nested containment list JSON

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

Read and write UCSC track and assembly hub files in node or the browser

Parses newick strings into JSON and JSON into newick

Molstar implementation for PDBe

Renders snippets on demand

interval tree, for fast overlapping interval queries

Web app and service for visualizing models of gene regulatory networks

BioJS event system

[](https://travis-ci.org/HelikarLab/ccNetViz) [](https://www.gnu.org/licenses/gpl-3.0) [![semantic-releas

WebGL protein viewer

A WebGL-powered JavaScript library for interactive tree visualisation.

utilities to read GTF data

Convience tools to work with seqs

JBrowse 2 code shared between web-app type products

TnT tree display

JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop

Parses FASTA files

Custom HTMLELement for rendering SwissBiopics and representing which subcellular locations are available

Display multiple sequences

Neighbor Joining library for NPM.

Custom HTMLELement for rendering Rhea reactions

neXtProt api javascript client

Display interaction information for different proteins and overlay information about diseases and subcellular location.

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

Nucleotide sequence manipulation and analysis library

Parser for BAM and BAM index (bai) files

A sequence logo visualizer

A network visualisation that displays molecular interaction data, including detailed residue-level information such as binding sites. Used in EBI's Complex Portal and elsewhere.

Molstar implementation for PDBe

Visualizes RNA secondary structures.

phylo-node: A Molecular Phylogenetic Toolkit using Node.js

Molstar implementation for DrugFlow

the core component (widget) of the ApiNATOMY circuit-board

A simple menu builder

Biological data models

Color schemes for residues

A module to analyze multiple seqs (information content, frequency, ...)

create indexed fasta files

Phylogenetic tree visualistion for the web

Custom HTMLELement for rendering Rhea reactions

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

JBrowse 2 text indexing for desktop

React component (and hook) for phylogenetic tree visualistion based on @mkoliba/phylogeny-tree

Biological Plasmid Visualization Component using AngularJS

LexiconMonoSeq, DOM Text based MSA visualization written in Javascript

React integration of phylocanvas.gl. Component and hook for phylogenetic tree visualistion.

A protein sequence viewer written in javascript

Ancestry: a package for visualization of lineage data

Simple barchart to show expression levels across experiments

A fork of @karpathy's tSNE library

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

Read htsjdk Tribble indexes using pure JavaScript

BioJS component to display BLAST alignments.

Display a protein/nucleotide sequence

TnT track-based board display

Phylogenetic tree visualisation for the web.

Custom JSON-Schema keywords for Ajv validator and validation service with API

Graph theory (a.k.a. network) library for analysis and visualisation

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

Parses clustal files

read and write GTF data as streams

Retrieve most relevant GO terms from g:Profiler

BioJS component to provide a box plot graph or bar graph hosted in Stemformatics

BLAST parser

AR Web Visualisation of DICOM Medical Images

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

Minimal genome browser based on TnT Board and Ensembl data

A GFF (general feature format) parser

Tree data manipulation for TnT

Parses strings from files in the GenomeDiff format generated by the breseq variant caller for haploid microbial organisms.

A visualisation tool for displaying rows in a hiearchic manner with heatmap capabilities

流程设计器

Interactive Cluster Heatmap library

Graph theory (a.k.a. network) library for analysis and visualisation

BioJS wrapper for PCViz widget from Pathway Commons team

Interactive visual representation/ web visualization tool for chromosome ideograms

A BioJS 2.0 component to view protein structures

Bilevel partition

Visualize events around the World

A grammar for describing microbial genotypes and phenotypes.

For retrieving article metadata from Europe PMC (http://www.europepmc.org). Covers all of PubMed (updated daily) and 3 million full text articles and other sources. A single article or list view can be returned.

Biological Plasmid Visualization Component using AngularJS

Contextualisation InDEx for biological Resources discovery: Contextualised visualisation of ELIXIR training materials, events and computing tools in a unique list.

[](https://www.npmjs.org/package/biojs-vis-events) [](http://travis-ci.org/marcoantonioburg

Display multiple sequences

Parses biom files

TreeMap Visualization

Graph theory (a.k.a. network) library for analysis and visualisation

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways

Visualise tissue-specific gene expression

This is a package to aid in the visualisation of various nextprot proteins based on their expression in various human tissues and on various evidences providing these expression data

Interactive network visualization tool for intuitive exploratory analysis of heterogeneous knowledge graphs

BioJS component to provide a box plot graph or bar graph hosted in Stemformatics

A module for parsing, reading & writing microtiter plate layouts in XSLX format.

Visualize the HSSP curve and impose the BLAST-derived sequence alignments and allow the user to dynamically filter and export the data shown on the graph for better insights.

BioJS component to provide a scatter plot graph hosted in Stemformatics

Venn diagram list comparisons

JS PSICQUIC client

Basic kaplan-meier methods

javascript bioinformatics format converter and validator

Protein feature viewer (uniprot annotation, variants, proteomics, ...)

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways

JBrowse 2 core libraries used by plugins

Generates exon intron map

[](https://travis-ci.org/yeastgenome/sgd_visualization)

BioJS component to provide a graph of the Rohart MSC Test hosted in Stemformatics

A Feature viewer

A collection of adapters to combine the MSA and Tree component

To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones

Interactive visualization of high-density SNP, QTL, GWAS and gene data

Lightweight genome browser for CTTV targets based on TnT Genome

A component to pin tootlip-like information

rest api for ensembl

This is the standalone widget for the OLS treeview

A simple pssh parser

BioJS component to provide a box plot graph or bar graph hosted in Stemformatics

Collection of high performance data visualization libraries

Visualisation of BLAST results

InterMine Identifiers Widget

A BioJS component for human genetic variation viewer(protein variants).

A module to analyze multiple seqs (information content, frequency, ...)

Pretty visualization for RNA sequences

Display multiple sequences

Graph theory (a.k.a. network) library for analysis and visualisation

Uses nearest neighbor thermodynamic calculations for primer Tm

renders a KEGGML file and displays a KEGG pathway

A model for Multilayer/Complex Networks

Displays protein domains

Graph theory (a.k.a. network) library for analysis and visualisation

Component to represent a chromosome with its bands

A graph visualisation tool for PSICQUIC servers

Visualiser for the SAM format

A slush generator for BioJS modules

A BioJS component for dynamic, multilevel visualisation of proteomes in UniProt.

Horizon chart js library for DNA data.

represent a network of protein interactions in a heatmap

PP2_Demo ========

A visualisation module for multilayer networks as modelled by mplexnet using ngraph.

genbank parser for genbank files

Gnomic grammar phylogeny library for NPM

A sequence logo vusualizer

TnT library for displaying trees and track-based annotations

Module like task queuer for async scripts

Parses 2D matrices (e.g. PAM)

Molstar implementation for PDBe

Graph theory (a.k.a. network) library for analysis and visualisation

Visualisation of human tissues

Visualization of protein similarity based on melting curves and distance metric

SAM format parser, with the hability to retrive regions from a ws

Visualisation of gene to phenotype relationships on the GenomeRNAi database

Draws a Needle-Plot for mutation data (stacked).

A simple snippet parser

Meta package for bio parser

A t-SNE web visualisation for high dimensional data

Graph theory (a.k.a. network) library for analysis and visualisation

Continous integration of BioJS components into Galay

EDAM selector component

Displays the information available in the Open PHACTS Linked Data cache about a compound.

This widget is a flexible and dynamic ontology visualisation. It can be seen in action on the new Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Export Phylocanvas trees as SVG

Interactive web heatmap viewer built with JavaScript

Simple barchart to show expression levels across experiments

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

For retrieving article metadata from Europe PMC (http://www.europepmc.org). Covers all of PubMed (updated daily) and 3 million full text articles and other sources. A single article or list view can be returned.

Graph theory (a.k.a. network) library for analysis and visualisation

A visualisation for variation data

This widget is a flexible and dynamic ontology visualisation. It can be seen in action on the new Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Contextual functions for Phylocanvas

JavaScript parser for the GenBank Flat File (GBF) format

neXtProt API and SPARQL client (for node command line interface)

Graph theory (a.k.a. network) library for analysis and visualisation

Molstar implementation for PDBe

Display multiple sequences

visualization a wig formatted file

Creating a basic example for biojs

Nucleotide sequence manipulation and analysis library

This widget is a standalone autocomplete search widget for the Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Display binary data adjacent to tree leaves.

Visualization of protein melting curves

circular feature viewer

Custom HTMLELement for rendering Rhea reactions

Learning bioJS

Mauve XMFA Parser

Molfile parser/visualizer in JavaScript

Graph theory (a.k.a. network) library for analysis and visualisation

Parser for annotation files

[](https://travis-ci.org/yeastgenome/sgd_visualization)

API client to interface with the TeSS Rest API. Retrieve a list of metedata about upcoming Life science events, training materials, and other training opportunities. Return results filtered by metadata facets

Interactive phylogenetic tree viewer for the web

Meta packages for bio parser

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Client library to retrieve citation data

BioJS component to provide a YuGene graph hosted in Stemformatics

A javascript library to parse simple interaction file (SIF) files.

BioJS Homology tool

represent a network of protein interactions

example of snipsoector

BioJS component to provide a Horizontal Summary graph hosted in Stemformatics

A collecection of utilities to parse and represent proteins in js

Load tree format strings via Ajax.

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Object and function to deals with a sequence region (reg:start-end)

BioJS component to provide a Box and Bar graph from Stemformatics

Visual history for Phylocanvas

Uniprot text file parser

Snap result viewer for biojs

[](https://travis-ci.org/yeastgenome/sgd_visualization)

loads a sequence:primer map

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Graph theory (a.k.a. network) library for analysis and visualisation

Lexicon-Rainbow Visualization Module

Graph theory (a.k.a. network) library for analysis and visualisation

A component to visualize RDF compact schemas

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

MITab Parser

Meta packages for biojs visulizations

Graph theory (a.k.a. network) library for analysis and visualisation

Draws a heatmap

Easy way to display features

A circular bar chart component for visualising allele frequencies, expression levels, number of samples, you name it!

Graph theory (a.k.a. network) library for analysis and visualisation

A library of parsers for interconverting between genbank, fasta, and (eventually) sbol through Teselagen's intermediary json format

A component for visualising disease information from UniProt data

Visual scale-bar for Phylocanvas

read indexed fasta and bgzipped fasta formats

Meta package for bio parser

Circos plot for genomics based on MoMIG toolkit

Visualise Gene and Protein interaction networks.

a biojs visulization component for volcano [prototype]

read indexed fasta and bgzipped fasta formats