JSPM

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways

JBrowse 2 core libraries used by plugins

Generates exon intron map

[](https://travis-ci.org/yeastgenome/sgd_visualization)

BioJS component to provide a graph of the Rohart MSC Test hosted in Stemformatics

A Feature viewer

A collection of adapters to combine the MSA and Tree component

To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones

Interactive visualization of high-density SNP, QTL, GWAS and gene data

Lightweight genome browser for CTTV targets based on TnT Genome

A component to pin tootlip-like information

rest api for ensembl

This is the standalone widget for the OLS treeview

A simple pssh parser

BioJS component to provide a box plot graph or bar graph hosted in Stemformatics

Collection of high performance data visualization libraries

Visualisation of BLAST results

InterMine Identifiers Widget

A BioJS component for human genetic variation viewer(protein variants).

A module to analyze multiple seqs (information content, frequency, ...)

Pretty visualization for RNA sequences

Display multiple sequences

Graph theory (a.k.a. network) library for analysis and visualisation

Uses nearest neighbor thermodynamic calculations for primer Tm

renders a KEGGML file and displays a KEGG pathway

A model for Multilayer/Complex Networks

Displays protein domains

Graph theory (a.k.a. network) library for analysis and visualisation

Component to represent a chromosome with its bands

A graph visualisation tool for PSICQUIC servers

Visualiser for the SAM format

A slush generator for BioJS modules

A BioJS component for dynamic, multilevel visualisation of proteomes in UniProt.

Horizon chart js library for DNA data.

represent a network of protein interactions in a heatmap

PP2_Demo ========

A visualisation module for multilayer networks as modelled by mplexnet using ngraph.

genbank parser for genbank files

Gnomic grammar phylogeny library for NPM

A sequence logo vusualizer

TnT library for displaying trees and track-based annotations

Module like task queuer for async scripts

Parses 2D matrices (e.g. PAM)

Molstar implementation for PDBe

Graph theory (a.k.a. network) library for analysis and visualisation

Visualisation of human tissues

Visualization of protein similarity based on melting curves and distance metric

SAM format parser, with the hability to retrive regions from a ws

Visualisation of gene to phenotype relationships on the GenomeRNAi database

Draws a Needle-Plot for mutation data (stacked).

A simple snippet parser

Meta package for bio parser

A t-SNE web visualisation for high dimensional data

Graph theory (a.k.a. network) library for analysis and visualisation

Continous integration of BioJS components into Galay

EDAM selector component

Displays the information available in the Open PHACTS Linked Data cache about a compound.

This widget is a flexible and dynamic ontology visualisation. It can be seen in action on the new Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Export Phylocanvas trees as SVG

Interactive web heatmap viewer built with JavaScript

Simple barchart to show expression levels across experiments

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

For retrieving article metadata from Europe PMC (http://www.europepmc.org). Covers all of PubMed (updated daily) and 3 million full text articles and other sources. A single article or list view can be returned.

Graph theory (a.k.a. network) library for analysis and visualisation

A visualisation for variation data

This widget is a flexible and dynamic ontology visualisation. It can be seen in action on the new Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Contextual functions for Phylocanvas

JavaScript parser for the GenBank Flat File (GBF) format

neXtProt API and SPARQL client (for node command line interface)

Graph theory (a.k.a. network) library for analysis and visualisation

Molstar implementation for PDBe

Display multiple sequences

visualization a wig formatted file

Creating a basic example for biojs

Nucleotide sequence manipulation and analysis library

This widget is a standalone autocomplete search widget for the Ontology Lookup Service (OLS) provided by the EMBL-EBI.

Display binary data adjacent to tree leaves.

Visualization of protein melting curves

circular feature viewer

Custom HTMLELement for rendering Rhea reactions

Learning bioJS

Mauve XMFA Parser

Molfile parser/visualizer in JavaScript

Graph theory (a.k.a. network) library for analysis and visualisation

Parser for annotation files

[](https://travis-ci.org/yeastgenome/sgd_visualization)

API client to interface with the TeSS Rest API. Retrieve a list of metedata about upcoming Life science events, training materials, and other training opportunities. Return results filtered by metadata facets

Interactive phylogenetic tree viewer for the web

Meta packages for bio parser

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Client library to retrieve citation data

BioJS component to provide a YuGene graph hosted in Stemformatics

A javascript library to parse simple interaction file (SIF) files.

BioJS Homology tool

represent a network of protein interactions

example of snipsoector

BioJS component to provide a Horizontal Summary graph hosted in Stemformatics

A collecection of utilities to parse and represent proteins in js

Load tree format strings via Ajax.

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Object and function to deals with a sequence region (reg:start-end)

BioJS component to provide a Box and Bar graph from Stemformatics

Visual history for Phylocanvas

Uniprot text file parser

Snap result viewer for biojs

[](https://travis-ci.org/yeastgenome/sgd_visualization)

loads a sequence:primer map

[](https://travis-ci.org/yeastgenome/sgd_visualization)

Graph theory (a.k.a. network) library for analysis and visualisation

Lexicon-Rainbow Visualization Module

Graph theory (a.k.a. network) library for analysis and visualisation

A component to visualize RDF compact schemas

A lightweight, generic and easy-to-use feature-viewer written in javascript with D3

MITab Parser

Meta packages for biojs visulizations

Graph theory (a.k.a. network) library for analysis and visualisation

Draws a heatmap

Easy way to display features

A circular bar chart component for visualising allele frequencies, expression levels, number of samples, you name it!

Graph theory (a.k.a. network) library for analysis and visualisation

A library of parsers for interconverting between genbank, fasta, and (eventually) sbol through Teselagen's intermediary json format

A component for visualising disease information from UniProt data

Visual scale-bar for Phylocanvas

read indexed fasta and bgzipped fasta formats

Meta package for bio parser

Circos plot for genomics based on MoMIG toolkit

Visualise Gene and Protein interaction networks.

a biojs visulization component for volcano [prototype]

read indexed fasta and bgzipped fasta formats

Graph theory (a.k.a. network) library for analysis and visualisation

Graph theory (a.k.a. network) library for analysis and visualisation

A simple melting curves TSV parser

Graph theory (a.k.a. network) library for analysis and visualisation